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International effort to sequence the first tree genome



Quaking Aspen, a member of the Populus genus.

February 11, 2002—Trees like cottonwood, hybrid poplar, and aspen have long been used as model organisms in forestry, and the choice of Populus as the first tree genome to sequence is due in large part to their rapid growth rate, small genome size, and widespread use in areas of interest to the forest industry and DOE.

"This effort will furnish scientists in this country and abroad with an unprecedented molecular 'parts list' for a tree," said Jerry Tuskan, a researcher in ORNL's Environmental Sciences Division. "Such a list will provide the scientific community with a catalog of genes, knowledge as to what these genes do in trees and an exciting opportunity to better understand how trees grow."

Ultimately, this information will allow scientists to more effectively use trees to carry out important functions like carbon sequestration and enhanced production of biomass for fuels and fiber.

This project builds on the success that DOE has had in mapping the human genome, a decade-long effort that is expected to lead to cures and the prevention of diseases in people. While sequencing the human genome took years, researchers at DOE's Joint Genome Institute, ORNL, and cooperating institutions expect to make the genetic blueprint of Populus available within 18 months. And they expect the payback to be significant.

"Genetic sequencing of Populus is expected to lead to faster growing trees, trees that produce more biomass for conversion to fuels, while also sequestering carbon from the atmosphere," said Stan Wullschleger of ORNL's Environmental Sciences Division. "In addition, trees with unique traits may be used in phytoremediation, a process whereby trees such as cottonwoods or hybrid poplars could be used to clean up hazardous waste sites.

"Clearly, the information we gain from this effort will benefit ongoing and future projects within DOE and open the doors to countless other opportunities to use woody plants in the pursuit of goals related to traditional forest products and even ecological preservation."

Worldwide, support for the project is high, as more than 100 scientists have indicated via the Web that they believe a poplar genome sequencing effort should be a top priority of forest research. Already, cottonwoods, hybrid poplars, and aspens are being used in a variety of ways ranging from paper production to carbon sequestration to the development of fast-growing trees as a source of feedstocks for renewable bio-based products.

"I have never seen the forest genetics community more excited," said Toby Bradshaw, a molecular biologist with the University of Washington, which helped DOE lay the foundation for this effort. "The sequencing of the poplar genome will be a bonanza for researchers seeking to understand how individual genes influence the growth of trees and their adaptation to the natural environment. This knowledge might eventually be applied to the breeding of fast-growing trees capable of producing wood, fiber, and energy sustainably on a small amount of land."

In addition to ORNL, participants in the international project include the Joint Genome Institute, the University of Washington, Genome Canada, and the Swedish University of Agricultural Sciences. The Joint Genome Institute sequencing facility will produce half of the sequence this year and another half in 2003.—by Ron Walli

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Media contact: Ron Walli, ORNL Communications & Community Outreach, (865) 576-0226, wallira@ornl.gov.
Technical contacts: Stan Wullschleger, ORNL's Environmental Sciences Division, wullschlegsd@ornl.gov, (865) 574-7839; or Jerry Tuskan, ORNL's Environmental Sciences Division, tuskanga@ornl.gov, (865) 576-8141.


Related Web Links

"Molecular genetics of growth and development in Populus (hybrid poplar), a forest tree," Professor Toby Bradshaw, University of Washington Department of Botany Plant Lab
Professor Toby Bradshaw faculty web page

Steve Strauss, Oregon State University

Tree Genetic Engineering Research Cooperative - Oregon State University

Joint Genome Institute

Oak Ridge National Laboratory Environmental Sciences Division

"Poplar (Populus) as a Model Forest Tree," H.D. Bradshaw, Jr., University of Washington Reinhart Ceulemans, University of Antwerp, John Davis, University of Florida, Reinhard Stettler, University of Washington

"Plotting a Course for GM Forestry," Bradshaw, H.D., Jr. and Strauss, S.H. (2001), Nature Biotechnology 19(12): 1103-1104.

"Simultaneous Saccharification and Cofermentation of Dilute-Acid-Pretreated Yellow Poplar Hardwood to Ethanol Using Xylose-Fermenting Zymomonas Mobilis," Biotechnology Center for Fuels and Chemicals, National Renewable Energy Laboratory

"Use of Poplar Trees in Remediating Heavy Metal Contaminated Sites," National Center for Environmental Research, U.S. Environmental Protection Agency


Funding: The research was funded by DOE's Office of Biological and Environmental Research.

Joint Genome Institute: Tucked away in a light industrial park in Walnut Creek, California, about 30 miles east of San Francisco, is the Joint Genome Institute (JGI), a collaboration of Lawrence Livermore, Lawrence Berkeley, and Los Alamos National Laboratories funded by the Department of Energy's Office of Biological and Environmental Research.

Oak Ridge National Laboratory is a DOE multiprogram research facility managed by UT-Battelle.

Author: Ron Walli, a research and development writer for Oak Ridge National Laboratory, writes news releases for national distribution, works with media and trade journal representatives, and coordinates photo coverage of ORNL research and development activities. For more science news, see ORNL News.

 

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