Public Release:  Incompatible assumptions common in biomedical research

PLOS

Strong, incompatible views are common in biomedicine but are largely invisible to biomedical experts themselves, creating artificial barriers to effective modeling of complex biological phenomena. Researchers at the University of Chicago explored the diversity in views among scientists researching the process of cancer metastasis and found ubiquitous disagreement around assumptions in any model of the progression of cancer cells from their original location to other parts of the body. The researchers suggest that making often invisible assumptions explicit could significantly improve the modeling of biomedical processes.

The study, published in the open-access journal PLoS Computational Biology on October 6th 2011, was based on interviews with 28 biologists and physicians considered experts in various cancer research fields. The authors found that a wide range of incompatible assumptions are held by scientists studying the same domain; in fact, no two scenarios for cancer metastasis were identical, and these differences were largely invisible to the experts themselves.

The authors believe this poses fundamental problems for modeling, peer-review, and scientific advance. They argue that assumptions are a critical part of any theory or mathematical model, and should be examined and collected systematically. Models that capture the full range of scientific opinion will create new opportunities for understanding how alternative assumptions and theories differ, and inform the researcher on how best to arbitrate between them. The authors then built an exemplar mathematical model of metastasis that makes conflicting assumptions explicit and exposes them for testing and systematic evaluation.

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FINANCIAL DISCLOSURE: This study was supported by grants from NIH (R01LM010132-01 to AR and JAE, R01GM061372 and GM081892-01A1 to AR) and Ludwig Cancer Research Institute (AR). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

COMPETING INTERESTS: The authors have declared that no competing interests exist.

CITATION: Divoli A, Mendonc¸a EA, Evans JA, Rzhetsky A (2011) Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. PLoS Comput Biol 7(10): e1002132. doi:10.1371/journal.pcbi.1002132

CONTACT:
Andrey Rzhetsky
University of Chicago,
Departments of Medicine and Human Genetics,
Computation Institute and Institute for Genomics and Systems Biology
Email: arzhetsk@medicine.bsd.uchicago.edu
Telephone: 773-702-2561 or 212-542-0961

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