Figure 1. (IMAGE)

Nanjing Agricultural University The Academy of Science

Figure 1.

Caption

Manhattan plots of resistance to downy mildew pathogen (P. effusa race 5) in the progeny panel of Lazio x Viroflay segregating for the RPF2 locus (A) and in combined progeny panel of Lazio x Viroflay and Whale x Viroflay segregating for the RPF2 and RPF3 loci (B). GWAS analysis in this study was performed with single marker regression (SMR), general linear model (GLM), mixed linear model (MLM) in the TASSEL program and logistic mixed model (LMM) in the GENESIS program. Markers associations from different models in the Manhattan plot are indicated with unique colors. The horizontal axis displays the physical position of the SNP. The vertical axis displays the association of the SNP with the trait expressed as -log10(P-value). The Sp75 assembly was used as the reference to call SNPs used in this study.

Credit

Horticulture Research

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