T2T Gap-Free Assembly of the Chinese Bayberry Reference Genome. (IMAGE)
Caption
T2T Gap-Free Assembly of the Chinese Bayberry Reference Genome. A. Variations in the morphology of the bayberry fruit displayed by different colors: white (Shuijingzhong, SJZ), red (Shenhongzhong, SHZ), and black-purple (Zaojia, ZJ) fruit. Scale bars = 1 cm. B. K-mer distribution (17-mer) spectrum, illustrating the genome complexity of bayberry. C. Features and synteny of the bayberry genome arranged from the outermost (a) to innermost (j) rings: (a) chromosome length in megabases (Mb); (b) LAI per chromosome; (c) GC content, with darker shades indicating higher values; (d) gene density; (e) Gypsy element density; (f) Copia element density; (g) overall TE density; (h) gene expression levels in ZJ fruit, presented as fragments per kilobase of transcript per million mapped reads (FPKM) in 5-Mb windows, normalized with log2 (FPKM +1); (i) tandem repeat density associated with centromeres, highlighted in blue for higher densities; (j) syntenic relationships depicted with connecting lines between chromosomal regions. D. Hi-C interaction heatmap displaying the connections between the eight chromosomes, with darker colors representing higher interaction frequencies. The axes denote the sequential positions of the chromosomes.
Credit
Horticulture Research
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CC BY