A core set of genes involved in the responses of honey bees to multiple diseases caused by viruses and parasites has been identified by an international team of researchers. The findings provide a better-defined starting point for future studies of honey-bee health, and may help scientists and beekeepers breed honey bees that are more resilient to stress.
"In the past decade, honey-bee populations have experienced severe and persistent losses across the Northern Hemisphere, mainly due to the effects of pathogens, such as fungi and viruses," said Vincent Doublet, postdoctoral research fellow, University of Exeter. "The genes that we identified offer new possibilities for the generation of honey-bee stocks that are resistant to these pathogens."
According to the researchers, recent advances in DNA sequencing have prompted numerous investigations of the genes involved in honey-bee responses to pathogens. Yet, until now, this vast quantity of data has been too cumbersome and idiosyncratic to reveal overarching patterns in honey-bee immunity.
"While many studies have used genomic approaches to understand how bees respond to viruses and parasites, it has been difficult to compare across these studies to find the core genes and pathways that help the bee fight off stressors," said Distinguished Professor of Entomology Christina Grozinger, Penn State. "Our team created a new bioinformatics tool that has enabled us to integrate information from 19 different genomic datasets to identify the key genes involved in honey bees' response to diseases."
Specifically, the team of 28 researchers, representing eight countries, created a new statistical technique, called directed rank-product analysis. The technique allowed them to identify the genes that were expressed similarly across the 19 datasets, rather than just the genes that were expressed more than others within a dataset.
The scientists found that these similarly expressed genes included those that encode proteins responsible for the response to tissue damage by pathogens, and those that encode enzymes involved in the metabolism of carbohydrates from food, among many others. A decrease in carbohydrate metabolism, they suggested, may illustrate the cost of the infection on the organism. The researchers report their findings in today's (Mar. 2) issue of BMC Genomics.
"Honey bees were thought to respond to different disease organisms in entirely different ways, but we have learned that they mostly rely on a core set of genes that they turn on or off in response to any major pathogenic challenge," said Robert Paxton, professor of zoology, German Centre for Integrative Biodiversity Research. "We can now explore the physiological mechanisms by which pathogens overcome their honey-bee hosts, and how honey bees can fight back against those pathogens."
The implications of the findings are not limited to honey bees. The team found that the core genes are part of conserved pathways -- meaning they have been maintained throughout the course of evolution among insects and therefore are shared by other insects. According to Doublet, this means that the genes provide important knowledge for understanding pathogen interactions with other insects, such as bumble bees, and for using pathogens to control insect pests, such as aphids and certain moths.
"This analysis provides unprecedented insight into the mechanisms that underpin the interactions between insects and their pathogens," said Doublet. "With this analysis, we generated a list of genes that will likely be an important source for future functional studies, for breeding more resilient honey-bee stocks and for controlling emerging bee diseases."
This research was supported by iDiv, the German Center for Integrative Biodiversity Research, located in Leipzig, Germany.
Other authors on the paper include Yvonne Poeschl, German Centre for Integrative Biodiversity Research; Andreas Gogol-Döring, Technische Hochschule Mittelhessen; Cédric Alaux, INRA; Desiderato Annoscia, Università degli Studi di Udine; Christian Aurori, University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca; Seth Barribeau, University of Liverpool; Oscar Bedoya-Reina, University of Edinburgh; Mark Brown, Royal Holloway University of London; James Bull, Swansea University; Michelle Flenniken, Montana State University; David Galbraith, Penn State; Elke Genersch, Institute for Bee Research of Hohen Neuendorf; Sebastian Gisder, Institute for Bee Research of Hohen Neuendorf; Ivo Grosse, Martin Luther University Halle-Wittenberg; Holly Holt, University of Minnesota; Dan Hultmark, Umeå University; H. Michael G. Lattorff, International Centre of Insect Physiology and Ecology; Yves Le Conte, INRA; Fabio Manfredini, Royal Holloway University of London; Dino McMahon, Freie Universität Berlin; Robin Moritz, Martin Luther University Halle-Wittenberg; Francesco Nazzi, Università degli Studi di Udine; Elina Niño, University of California, Davis; Katja Nowick, University of Leipzig; and Ronald van Rij, Radboud University.