Researchers from North Carolina State University have developed an artificial enzymatic pathway for synthesizing isoprenoids, or terpenes, in E. coli. This shorter, more efficient, cost-effective and customizable pathway transforms E. coli into a factory that can produce terpenes for use in everything from cancer drugs to biofuels.
Terpenes are a large class of naturally occurring molecules that are useful in industries ranging from pharmaceuticals and cosmetics to food and biofuels. In nature, terpenes are found in plants and microbes; for example, lycopene - which gives tomatoes their color - is a terpene.
Since it isn't practical to extract these molecules directly from their natural sources, scientists can use biosynthesis to produce them. However, biosynthesizing terpenes has traditionally proven challenging.
"Terpenes are difficult to biosynthesize because nature's methods for making the building blocks of these molecules are lengthy, complicated and involve enzymes that are difficult to engineer," says Gavin Williams, associate professor of chemistry at NC State and lead author of a paper describing the work. "These difficulties in turn make it hard to engineer microbes to manufacture these molecules in large amounts."
Williams works with E. coli, inserting enzymatic pathways into the bacteria that transform them into tiny molecular production factories. With former Ph.D. student Sean Lund, and current graduate student Rachael Hall, Williams designed an artificial pathway for terpene synthesis that utilizes only two enzymes, rather than the six or seven that occur in natural pathways.
"Nature uses approximately two routes for terpene synthesis, and each consists of six or seven enzymes," Williams says. "We created a third route - a shortcut - with two enzymes that occur in nature, but that aren't normally involved in this pathway."
One of the key enzymes Williams and his team used - an acid phosphatase (PhoN) -normally removes phosphates. But in the artificial pathway, this enzyme cleverly performs the reverse reaction. "PhoN is particularly useful here, due to its promiscuous nature," Williams says. "Promiscuity in enzymes means that they can carry out the same transformation on many different molecules."
The team engineered E. coli to produce several different varieties of terpene with the simplified pathway, including lycopene. They found that the new pathway was equally as productive as longer, more difficult-to-engineer pathways currently in use.
"This simple, prototypical pathway and strain is just as effective as those that have been extensively engineered in manufacturing the molecules of interest," Williams says. "And because the pathway is promiscuous, it's customizable."
Next steps for the researchers include using the pathway to make terpenes that are new to nature for use in compounds that are too expensive to manufacture with current methods.
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The work appears in ACS Synthetic Biology and was supported in part by the National Institutes of Health (grant GM104258).
Note to editors: An abstract follows.
"An artificial pathway for isoprenoid biosynthesis decoupled from native hemiterpene metabolism"
DOI: 10.1021/acssynbio.8b00383
Authors: Sean Lund, Rachael Hall, and Gavin Williams, North Carolina State University
Published: ACS Synthetic Biology
Abstract:
Isoprenoids are constructed in nature using hemiterpene building blocks that are biosynthesized from lengthy enzymatic pathways with little opportunity to deploy precursor-directed biosynthesis. Here, an artificial alcohol-dependent hemiterpene biosynthetic pathway was designed and coupled to several isoprenoid biosynthetic systems, affording lycopene and a prenylated tryptophan in robust yields. This approach affords a potential route to diverse non-natural hemiterpenes and by extension isoprenoids modified with non-natural chemical functionality. Accordingly, the prototype chemo-enzymatic pathway is a critical first step towards the construction of engineered microbial strains for bioconversion of simple scalable building blocks into complex isoprenoid scaffolds.
Journal
ACS Synthetic Biology