News Release

New fluorescent imaging sorts microbiome in human mouth

Research presented at ASCB annual meeting

Peer-Reviewed Publication

American Society for Cell Biology

New fluorescent labeling technology that distinguishes in a single image the population size and spatial distribution of 15 different taxa has uncovered new taxon pairings that indicate unsuspected cooperation -- and standoffishness -- between members of the microbe biofilm that covers teeth, according to a presentation on Dec. 7, at the American Society for Cell Biology's Annual Meeting in Denver.

Members of the genera Prevotella and Actinomyces showed the greatest ability to interact, suggesting a central role for them in producing biofilms, reported the researchers. The study, to determine "who's who" in the human mouth was conducted by researchers at the Marine Biological Laboratory (MBL) in Woods Hole, MA,

While both genera are implicated in periodontal disease, species of Prevotella have been recovered from anaerobic lung infections. Actinomycosis is an infection of antibiotic resistant strains in the mouth and gastrointestinal tract.

Alex Valm, Ph.D., Gary Borisy, Ph.D., and collaborators refer to their new fluorescent labeling technology system as Combinatorial Labeling and Spectral Imaging (CLASI). It was designed to overcome a major limit of existing fluorescent labeling system, whose original green fluorescent protein (GFP) tag occurred in one color (green).

A whole palette of colors is now available to scientists through an ever-expanding array of fluorescent proteins or the addition of glowing molecular add-ons called fluorophores, but keeping track of more than a handful of colors becomes exponentially difficult.

The MBL team's first CLASI system used binary combinations of six fluorophores to perform the first quantitative analysis of a large number of microbes in a biofilm.

With the use of novel linear "unmixing" algorithms, the CLASI system is now being scaled up to look at over 100 differently labeled microbes in each image and to build the first systems-level structural analysis of the entire human oral microbiome.



Alex Valm, Ph.D.
Marine Biological Laboratory

Diane Kenney
Science Writer
Marine Biological Laboratory

John Fleischman
American Society for Cell Biology
513-706-0212 (cell)

Cathy Yarbrough


Wednesday, Dec. 7
10:15 to 10:35 a.m.
Minisymposium: Cell-Pathogen Interactions (Viruses and Bacteria)
Presentation 180

The research was funded by a grant from the Alfred P. Sloan Foundation, National Institutes of Health (NIH) Grant RC1DE20630, and NIH Fellowship Award F31DE019576 from the National Institute of Dental and Craniofacial Research.

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