Protein foundation models reshaping the research paradigm of life sciences
Peer-Reviewed Publication
Updates every hour. Last Updated: 22-Jan-2026 02:11 ET (22-Jan-2026 07:11 GMT/UTC)
A comprehensive review published in Science China Life Sciences by a collaborative team led by Prof. Wenjie Shu (Bioinformatics Center of AMMS) et al. highlights that Protein Foundation Models (pFMs) have emerged as game-changers in life science.
These AI tools, trained on large-scale datasets, can predict protein characteristics and design new proteins with desired functions. This review explores the progress, uses, challenges, and future of pFMs. It looks at the diverse data—from genetic sequences to 3D structures and functional information—that these models learn from. It covers key AI methods and highlights real-world impacts in research, protein design, and medicine. The article also discusses major challenges, including data scarcity and the complexity of validating model outputs. Looking ahead, the review highlights promising developments, such as modeling protein interactions and building virtual cell systems, which have the potential to enpower the next generation of bioengineering. This comprehensive overview serves as both a valuable resource for computational researchers and a strategic reference for scientists using these tools in related fields.
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